KENDAT supreme body is the 9-Member Board of Directors who are professionals in various aspects of KENDAT mandate. Professions represented are led by a renowned Leader and Change Catalyst Engineer Alfred Ndiritu who is also a Horticulture Farmer. Other professions are experts in rural development, agricultural research and extension, agricultural production and marketing, rural infrastructure engineering, rural industry entrepreneurship and engineering.

KENDAT day-to-day project operations are 80% field based, led by Heads of  Regions domiciled in project operational areas. KENDAT day to day leadership is provided by the CEO and his Management Team composed of 3 Programme Managers, the Administration, Communication and the Finance Officers.

KENDAT Management organogram and other operational etiquette are well captured in the Five-Year (2012-2017) Strategic Plan. KENDAT maintains an external evaluation eye on herself by conducting regular programme review, engaging beneficiary stakeholders as necessary. KENDAT has tools such as Staff Handbook, with Financial and HR policy and procedures, organizational risk register, security plan among other governance guidelines.